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5hmdc  (Jena Bioscience)


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    Structured Review

    Jena Bioscience 5hmdc
    BrxU demonstrates preference between differing cytosine modifications. (A) Titrations of His 6 -BrxU were incubated with 100 ng of pUC19 incorporated with dC, <t>5hmdC,</t> 5mdC or glc-5mdC for 10 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (B) Timecourse of His 6 -BrxU (300 nM) mixed with 100 ng of pUC19 incorporated with dC, 5hmC, 5mC or glc-5hmC and incubated at 37 °C for from 1 to 30 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (C) The average percentage of DNA remaining in His 6 -BrxU titration reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation. (D) The average percentage DNA remaining in His 6 -BrxU timecourse reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation.
    5hmdc, supplied by Jena Bioscience, used in various techniques. Bioz Stars score: 94/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/5-hydroxymethyl-dctp/5-Hydroxymethyl-dCTP/pmc12409352-115-10-13
    Average 94 stars, based on 13 article reviews
    5hmdc - by Bioz Stars, 2026-10
    94/100 stars

    Images

    1) Product Images from "Modified DNA substrate selectivity by GmrSD-family Type IV restriction enzyme BrxU"

    Article Title: Modified DNA substrate selectivity by GmrSD-family Type IV restriction enzyme BrxU

    Journal: Philosophical Transactions of the Royal Society B: Biological Sciences

    doi: 10.1098/rstb.2024.0072

    BrxU demonstrates preference between differing cytosine modifications. (A) Titrations of His 6 -BrxU were incubated with 100 ng of pUC19 incorporated with dC, 5hmdC, 5mdC or glc-5mdC for 10 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (B) Timecourse of His 6 -BrxU (300 nM) mixed with 100 ng of pUC19 incorporated with dC, 5hmC, 5mC or glc-5hmC and incubated at 37 °C for from 1 to 30 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (C) The average percentage of DNA remaining in His 6 -BrxU titration reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation. (D) The average percentage DNA remaining in His 6 -BrxU timecourse reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation.
    Figure Legend Snippet: BrxU demonstrates preference between differing cytosine modifications. (A) Titrations of His 6 -BrxU were incubated with 100 ng of pUC19 incorporated with dC, 5hmdC, 5mdC or glc-5mdC for 10 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (B) Timecourse of His 6 -BrxU (300 nM) mixed with 100 ng of pUC19 incorporated with dC, 5hmC, 5mC or glc-5hmC and incubated at 37 °C for from 1 to 30 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (C) The average percentage of DNA remaining in His 6 -BrxU titration reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation. (D) The average percentage DNA remaining in His 6 -BrxU timecourse reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation.

    Techniques Used: Incubation, Titration, Standard Deviation, Polymerase Chain Reaction

    Related Articles

    Plasmid Preparation:

    Article Title: A pair of DNA glucosyltransferases elevate counter-defense in bacteriophage T4
    Article Snippet: ate. In the PCR preparation, the dNTP mixture was substituted with an alternative mixture that was prepared by mixing the individual nucleotides, dATP, dGTP, and dTTP, along with 5-hydroxymethyl-dCTP (Jena Bioscience, #NU-932S). Spacers corresponding to target protospacers in α-gt, β-gt , and pseudo-gene were introduced into the plasmid pBZCas13b (Addgene #103986), encoding Cas13b, as described ear

    Polymerase Chain Reaction:

    Article Title: A pair of DNA glucosyltransferases elevate counter-defense in bacteriophage T4
    Article Snippet: ate. In the PCR preparation, the dNTP mixture was substituted with an alternative mixture that was prepared by mixing the individual nucleotides, dATP, dGTP, and dTTP, along with 5-hydroxymethyl-dCTP (Jena Bioscience, #NU-932S). Spacers corresponding to target protospacers in α-gt, β-gt , and pseudo-gene were introduced into the plasmid pBZCas13b (Addgene #103986), encoding Cas13b, as described ear

    Analogues:

    Article Title: A pair of DNA glucosyltransferases elevate counter-defense in bacteriophage T4
    Article Snippet: ate. In the PCR preparation, the dNTP mixture was substituted with an alternative mixture that was prepared by mixing the individual nucleotides, dATP, dGTP, and dTTP, along with 5-hydroxymethyl-dCTP (Jena Bioscience, #NU-932S). Spacers corresponding to target protospacers in α-gt, β-gt , and pseudo-gene were introduced into the plasmid pBZCas13b (Addgene #103986), encoding Cas13b, as described ear

    Purification:

    Article Title: A pair of DNA glucosyltransferases elevate counter-defense in bacteriophage T4
    Article Snippet: ate. In the PCR preparation, the dNTP mixture was substituted with an alternative mixture that was prepared by mixing the individual nucleotides, dATP, dGTP, and dTTP, along with 5-hydroxymethyl-dCTP (Jena Bioscience, #NU-932S). Spacers corresponding to target protospacers in α-gt, β-gt , and pseudo-gene were introduced into the plasmid pBZCas13b (Addgene #103986), encoding Cas13b, as described ear

    In Vitro:

    Article Title: A pair of DNA glucosyltransferases elevate counter-defense in bacteriophage T4
    Article Snippet: ate. In the PCR preparation, the dNTP mixture was substituted with an alternative mixture that was prepared by mixing the individual nucleotides, dATP, dGTP, and dTTP, along with 5-hydroxymethyl-dCTP (Jena Bioscience, #NU-932S). Spacers corresponding to target protospacers in α-gt, β-gt , and pseudo-gene were introduced into the plasmid pBZCas13b (Addgene #103986), encoding Cas13b, as described ear

    Transfection:

    Article Title: A pair of DNA glucosyltransferases elevate counter-defense in bacteriophage T4
    Article Snippet: ate. In the PCR preparation, the dNTP mixture was substituted with an alternative mixture that was prepared by mixing the individual nucleotides, dATP, dGTP, and dTTP, along with 5-hydroxymethyl-dCTP (Jena Bioscience, #NU-932S). Spacers corresponding to target protospacers in α-gt, β-gt , and pseudo-gene were introduced into the plasmid pBZCas13b (Addgene #103986), encoding Cas13b, as described ear

    Modification:

    Article Title: A pair of DNA glucosyltransferases elevate counter-defense in bacteriophage T4
    Article Snippet: ate. In the PCR preparation, the dNTP mixture was substituted with an alternative mixture that was prepared by mixing the individual nucleotides, dATP, dGTP, and dTTP, along with 5-hydroxymethyl-dCTP (Jena Bioscience, #NU-932S). Spacers corresponding to target protospacers in α-gt, β-gt , and pseudo-gene were introduced into the plasmid pBZCas13b (Addgene #103986), encoding Cas13b, as described ear



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    Image Search Results


    BrxU demonstrates preference between differing cytosine modifications. (A) Titrations of His 6 -BrxU were incubated with 100 ng of pUC19 incorporated with dC, 5hmdC, 5mdC or glc-5mdC for 10 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (B) Timecourse of His 6 -BrxU (300 nM) mixed with 100 ng of pUC19 incorporated with dC, 5hmC, 5mC or glc-5hmC and incubated at 37 °C for from 1 to 30 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (C) The average percentage of DNA remaining in His 6 -BrxU titration reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation. (D) The average percentage DNA remaining in His 6 -BrxU timecourse reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation.

    Journal: Philosophical Transactions of the Royal Society B: Biological Sciences

    Article Title: Modified DNA substrate selectivity by GmrSD-family Type IV restriction enzyme BrxU

    doi: 10.1098/rstb.2024.0072

    Figure Lengend Snippet: BrxU demonstrates preference between differing cytosine modifications. (A) Titrations of His 6 -BrxU were incubated with 100 ng of pUC19 incorporated with dC, 5hmdC, 5mdC or glc-5mdC for 10 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (B) Timecourse of His 6 -BrxU (300 nM) mixed with 100 ng of pUC19 incorporated with dC, 5hmC, 5mC or glc-5hmC and incubated at 37 °C for from 1 to 30 min. The reactions were performed in triplicate, and representative gels are shown. The presence of ATP in the reaction is denoted with a + or − sign, and ATPγS is denoted by γS. (C) The average percentage of DNA remaining in His 6 -BrxU titration reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation. (D) The average percentage DNA remaining in His 6 -BrxU timecourse reactions with ATP compared with reactions without ATP, calculated from triplicate gels. Error bars represent standard deviation.

    Article Snippet: Amplification was carried out replacing deoxycytidine triphosphate (dCTP) with either 5hmdC or 5mdC (Jena Biosciences).

    Techniques: Incubation, Titration, Standard Deviation, Polymerase Chain Reaction